For phenanthrene, growth-positive wells were determined photometrically, at 450 nm, with a reference wavelength of 630 nm, after a 5-h incubation at 20 °C with the tetrazolium compound WST-1 with a threshold limit of 0.050. Negative control plates contained no hydrocarbons. Soil (2.5 g) was transferred to 100-mL airtight glass flasks

and 100 μL of acetone stock solutions containing a mixture of [9-14C]-labelled phenanthrene (8.2 mCi mmol−1, radiochemical purity 97.7%; Sigma-Aldrich, MI) and analytical-grade phenanthrene (>98% purity; Merck, Darmstadt, Germany) were added to each flask as described by Brinch et al. (2002). The flasks were left open in a laminar flowbench for 1 h, allowing the acetone www.selleckchem.com/products/Verteporfin(Visudyne).html to evaporate before transfer of 7.5 g soil and 0.5 mL sterile tap water, yielding final phenanthrene concentrations of 1 mg kg−1 soil and approximately 15 000 d.p.m. of the [14C]-labelled Fluorouracil supplier tracers per flask. The aerobic mineralization to 14CO2 was monitored by inserting a CO2 trap, consisting of a 10-ml glass tube containing 2 mL 0.5 M NaOH, into each flask. At incubation temperatures below 0 °C, the base solution was changed to 2 M NaOH to prevent freezing of the CO2 trap during incubation. The NaOH was replaced

at regular intervals in a laminar flow bench and mixed with 10 mL of Wallac OptiPhase HiSafe 3 scintillation cocktail (Turku, Finland) and the radioactivity was determined by counting for 10 min in a Wallac 1409 liquid scintillation counter. [14C-U-ring]benzoic acid (specific Selleck Palbociclib activity 6.2 mCi mmol−1, radiochemical purity 99.5%; Sigma-Aldrich, MI) mixed with unlabelled benzoic acid (99.5% purity; Sigma-Aldrich, Munich, Germany) was added to separate flasks for measurement of aromatic degradative activity and it was added directly to the soils in a sterile water stock solution, yielding a final concentration of 1 mg kg−1 soil and approximately 20 000 d.p.m. per flask. All experiments were performed in triplicate and the results were correlated for quenching and background radioactivity. The most diluted growth-positive wells from the phenanthrene MPN plates with contaminated

soils were used to prepare Bacteria 16S rRNA gene clones. Five hundred microlitres were sampled from five positive MPN wells and total community DNA was extracted using the UltraClean Microbial DNA Isolation Kit (MO BIO Laboratories Inc.). Bacterial 16S rRNA genes were amplified from the DNA extracts by PCR with the primers 27f and 1492r (Lane, 1991). The reagents used in the 25 μL PCR were as follows: PuReTaq™ Ready-To-Go™ beads (GE Healthcare, UK), 0.125 μL of each primer (10 pmol μL−1) and 1 μL template DNA. The temperature program for PCR was as follows: initial denaturation step of 10 min at 95 °C, followed by 30 cycles at 95 °C for 45 s and 55 °C for 45 s, followed by 72 °C for 90 s, and a final extension of 72 °C for 7 min.